Gene detail

Detailed information of OS493_003398-T1 in Lophelia pertusa

Genomic Location: scaffold_7:952117...956783
NR annotation: KAJ7393739.1, 40S ribosomal protein S27-like [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KHT7	Small ribosomal subunit protein eS27 OS=Bos taurus OX=9913 GN=RPS27 PE=1 SV=3
P42677	Small ribosomal subunit protein eS27 OS=Homo sapiens OX=9606 GN=RPS27 PE=1 SV=3
Q6ZWU9	Small ribosomal subunit protein eS27 OS=Mus musculus OX=10090 GN=Rps27 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009835 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01667 all species →	Ribosomal_S27e	Ribosomal protein S27	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000592 all species →	Family	Small ribosomal subunit protein eS27	Interproscan
IPR011332 all species →	Homologous_superfamily	Zinc-binding ribosomal protein	Interproscan
IPR023407 all species →	Homologous_superfamily	Small ribosomal subunit protein eS27, zinc-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11594 all species →	40S RIBOSOMAL PROTEIN S27	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0000028 all species →	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02978	RP-S27e, RPS27; small subunit ribosomal protein S27e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_003398-T1 global co-expression network