Gene detail

Detailed information of OS493_003419-T1 in Lophelia pertusa

Genomic Location: scaffold_7:1189756...1192205
NR annotation: KAJ7393760.1, hypothetical protein OS493_003419 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000104 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16975 all species →	UPAR_LY6_2	Ly6/PLAUR domain-containing protein 6, Lypd6	Domain	Interproscan
PF00021 all species →	UPAR_LY6	u-PAR/Ly-6 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045860 all species →	Homologous_superfamily	Snake toxin-like superfamily	Interproscan
IPR016054 all species →	Domain	Ly-6 antigen/uPA receptor-like	Interproscan
IPR018363 all species →	Conserved_site	CD59 antigen, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10036 all species →	CD59 GLYCOPROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_003419-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003419-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003419-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

179.1Max TPM

61.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	55.39	116.04
polyp at pH7 6	18	18	62.50	131.80
coral polyp · control treatment	16	16	59.16	154.99
coral polyp · oil and dispersant treatment	16	16	63.14	136.52
coral polyp · oil treatment	16	16	70.85	179.07
coral polyp · dispersant treatment	16	16	68.16	172.49
Polyp	10	10	43.09	84.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	116.04
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	101.92
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.62
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.47
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.14
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.51
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.26
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.70
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.26
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.67
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.63
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.49
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.94
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.01
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	131.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	127.01
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	95.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	91.15
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.27
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.42
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.52
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.43
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.73
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.65
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.64
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.51
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.44
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.56
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.27
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.07
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.50
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.84
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	154.99
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	124.37
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	108.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	100.24
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.34
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.36
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.93
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.77
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.22
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.52
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.01
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	136.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	117.11
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	115.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.02
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.61
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.01
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.66
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.61
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.01
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.60
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	179.07
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	145.77
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	113.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	112.32
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	111.46
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.81
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.55
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.14
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.51
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.54
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.64
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.49
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.26
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.93
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.70
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	172.49
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	120.88
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.80
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	96.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	91.97
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.74
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.38
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.55
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.02
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.48
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.42
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.80
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.55
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	84.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	76.85
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	74.53
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	60.01
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	41.87
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	34.12
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.52
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.86
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.25
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.89

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.