Gene detail

Detailed information of OS493_003428-T1 in Lophelia pertusa

Genomic Location: scaffold_7:1324091...1325346
NR annotation: KAJ7393769.1, hypothetical protein OS493_003428 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005738 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_003428-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

No InterPro signature was detected for OS493_003428-T1. This gene does have a gene model — the search simply returned no hit.

PANTHER

PANTHER term	Description	Source
PTHR19991 all species →	L 2 01289	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_003428-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003428-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003428-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

93.7Max TPM

16.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.50	26.95
polyp at pH7 6	18	18	15.36	22.44
coral polyp · control treatment	16	16	24.56	93.73
coral polyp · oil and dispersant treatment	16	16	15.23	32.07
coral polyp · oil treatment	16	16	18.51	37.57
coral polyp · dispersant treatment	16	16	15.29	30.55
Polyp	10	10	13.19	24.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.95
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.57
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.20
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.65
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.70
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.22
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.19
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.80
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.29
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.24
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.23
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.30
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.44
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.43
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.97
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.37
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.82
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.70
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.81
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.35
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.43
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.67
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.56
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.12
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.26
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.73
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.76
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.09
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.52
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.05
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.25
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.73
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.63
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.88
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.19
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.95
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.04
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.79
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.10
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.85
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.91
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.23
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.38
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.20
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.18
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.35
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.94
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.74
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.13
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.04
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.75
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.02
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.57
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.68
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.34
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.06
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.93
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.24
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.83
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.62
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.20
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.22
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.28
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.55
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.99
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.04
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.61
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.61
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.31
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.22
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.71
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.71
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.13
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	24.89
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	19.23
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.98
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.09
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.91
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.86
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.63

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.