Gene detail

Detailed information of OS493_003458-T1 in Lophelia pertusa

Genomic Location: scaffold_7:1732322...1732837
NR annotation: KAJ7393797.1, WD repeat-containing protein 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ERH3	WD repeat-containing protein 7 OS=Rattus norvegicus OX=10116 GN=Wdr7 PE=1 SV=1
Q9Y4E6	WD repeat-containing protein 7 OS=Homo sapiens OX=9606 GN=WDR7 PE=1 SV=2
Q920I9	WD repeat-containing protein 7 OS=Mus musculus OX=10090 GN=Wdr7 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003336 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_003458-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR049916 all species →	Family	WD repeat-containing protein 7/72	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44099 all species →	RABCONNECTIN-3B, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003458-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003458-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

29.1Max TPM

10.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	7.49	18.10
polyp at pH7 6	18	14	6.26	16.51
coral polyp · control treatment	16	16	15.99	29.08
coral polyp · oil and dispersant treatment	16	16	13.84	19.97
coral polyp · oil treatment	16	16	14.23	22.91
coral polyp · dispersant treatment	16	16	10.14	15.37
Polyp	10	9	3.89	8.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.10
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.23
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.89
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.14
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.76
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.58
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.13
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.64
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.68
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.35
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.92
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.67
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.37
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.92
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.86
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.59
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.45
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.35
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.80
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.47
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.09
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.05
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.23
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.86
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.54
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.20
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.99
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.89
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.40
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.97
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.25
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.52
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.51
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.31
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.18
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.07
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.94
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.70
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.91
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.51
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.77
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.32
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.22
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.77
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.91
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.50
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.60
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.94
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.53
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.37
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.29
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.97
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.46
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.53
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.17
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.90
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.99
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.52
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.97
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.06
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.39
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.32
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.86
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.67
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.