Gene detail

Detailed information of OS493_003492-T1 in Lophelia pertusa

Genomic Location: scaffold_7:2243752...2251854
NR annotation: KAJ7393826.1, hypothetical protein OS493_003492 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UTA8	Uncharacterized methyltransferase-like C25B8.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25B8.10 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000862 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08241 all species →	Methyltransf_11	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051052 all species →	Family	Diverse substrate methyltransferase	Interproscan
IPR013216 all species →	Domain	Methyltransferase type 11	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44942 all species →	METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008757 all species →	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003492-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003492-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

105.7Max TPM

46.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	48.06	91.18
polyp at pH7 6	18	18	49.82	92.18
coral polyp · control treatment	16	16	50.39	105.26
coral polyp · oil and dispersant treatment	16	16	44.78	87.82
coral polyp · oil treatment	16	16	56.12	105.66
coral polyp · dispersant treatment	16	16	35.27	85.74
Polyp	10	10	31.93	56.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	91.18
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.71
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.85
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.55
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.16
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.18
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.64
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.82
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.79
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.50
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.22
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.92
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.61
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.18
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.20
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.71
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.24
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.52
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.32
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.03
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.30
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.13
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.91
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.75
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.59
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.38
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.87
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	105.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.20
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.52
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.26
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.48
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.56
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.39
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.15
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.62
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.39
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.73
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.22
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.55
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.94
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.07
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.87
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.70
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.95
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.16
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.20
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	105.66
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	96.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.69
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.02
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.47
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.22
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.49
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.76
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.72
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.66
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.54
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.51
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.18
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	85.74
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.43
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.39
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.51
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.20
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.73
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.58
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.99
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.66
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.58
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.10
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	56.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	48.57
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	34.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	32.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	29.76
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	26.70
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	25.59
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.58
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	21.35
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.62

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.