Detailed information of OS493_003515-T1 in Lophelia pertusa

Genomic Location: scaffold_7:2610192...2624534
NR annotation: KAJ7393848.1, Histone-lysine N-methyltransferase prdm9 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9NQW5Histone-lysine N-methyltransferase PRDM7 OS=Homo sapiens OX=9606 GN=PRDM7 PE=1 SV=2
Q96EQ9Histone-lysine N-methyltransferase PRDM9 OS=Mus musculus OX=10090 GN=Prdm9 PE=1 SV=2
P0C6Y7Histone-lysine N-methyltransferase PRDM9 OS=Rattus norvegicus OX=10116 GN=Prdm9 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000194 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13912
all species →		zf-C2H2_6C2H2-type zinc fingerDomainInterproscan
PF00096
all species →		zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF21549
all species →		PRDM2_PRPR domain zinc finger protein 2, PR domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR044417
all species →		DomainPRDM7/PRDM9, PR/SET domainInterproscan
IPR036236
all species →		Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR001214
all species →		DomainSET domainInterproscan
IPR050589
all species →		FamilyIkaros C2H2-type zinc-fingerInterproscan
IPR046341
all species →		Homologous_superfamilySET domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24404
all species →		ZINC FINGER PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0042054
all species →		Molecular Functionhistone methyltransferase activityInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0003700
all species →		Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_003515-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_003515-T1 global co-expression network
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