Gene detail

Detailed information of OS493_003540-T1 in Lophelia pertusa

Genomic Location: scaffold_7:3046444...3046917
NR annotation: KAJ7393873.1, hypothetical protein OS493_003540 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001724 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08592 all species →	Anthrone_oxy	Anthrone oxygenase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013901 all species →	Family	Anthrone oxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36535 all species →	YALI0E30327P	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_003540-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003540-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003540-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

90.6Max TPM

31.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	54.70	90.57
polyp at pH7 6	18	18	47.81	75.56
coral polyp · control treatment	16	16	21.86	43.03
coral polyp · oil and dispersant treatment	16	15	15.34	43.67
coral polyp · oil treatment	16	16	29.05	64.99
coral polyp · dispersant treatment	16	16	15.89	36.89
Polyp	10	10	33.08	74.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	90.57
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	86.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.66
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.79
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.12
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.23
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.05
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.52
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.45
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.79
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.19
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.81
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.10
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.05
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.78
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.88
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.10
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.88
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.09
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.81
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.53
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.38
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.23
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.05
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.09
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.19
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.38
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.03
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.03
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.39
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.17
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.08
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.91
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.05
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.46
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.32
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.48
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.43
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.67
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.21
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.84
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.26
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.74
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.40
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.40
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.15
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.41
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.01
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.88
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.19
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.39
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.50
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.42
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.44
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.84
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.79
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.30
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.76
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.36
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.72
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.89
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.29
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.63
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.29
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.20
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.08
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.65
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.09
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.28
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.39
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	74.71
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	49.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	42.52
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	40.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	38.85
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	29.50
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	23.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.09
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.08

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.