Gene detail

Detailed information of OS493_003543-T1 in Lophelia pertusa

Genomic Location: scaffold_7:3051789...3054668
NR annotation: KAJ7393876.1, Histidine triad nucleotide-binding protein 2, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P73481	Uncharacterized HIT-like protein slr1234 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=slr1234 PE=4 SV=1
Q8SQ21	Adenosine 5'-monophosphoramidase HINT2 OS=Bos taurus OX=9913 GN=HINT2 PE=2 SV=1
P42856	14 kDa zinc-binding protein OS=Zea mays OX=4577 GN=ZBP14 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001654 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01230 all species →	HIT	HIT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019808 all species →	Conserved_site	Histidine triad, conserved site	Interproscan
IPR036265 all species →	Homologous_superfamily	HIT-like superfamily	Interproscan
IPR001310 all species →	Family	Histidine triad (HIT) protein	Interproscan
IPR011146 all species →	Domain	HIT-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23089 all species →	HISTIDINE TRIAD HIT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003543-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003543-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

53.5Max TPM

19.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	32.08	53.50
polyp at pH7 6	18	18	27.71	41.29
coral polyp · control treatment	16	16	15.66	32.96
coral polyp · oil and dispersant treatment	16	16	11.35	27.00
coral polyp · oil treatment	16	16	18.77	43.89
coral polyp · dispersant treatment	16	16	10.22	20.26
Polyp	10	8	15.69	42.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.50
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.24
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.34
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.09
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.88
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.54
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.91
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.16
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.84
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.08
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.43
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.60
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.59
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.22
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.21
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.40
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.33
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.29
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.77
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.23
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.47
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.64
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.86
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.04
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.51
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.16
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.87
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.17
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.16
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.48
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.55
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.97
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.49
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.32
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.70
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.59
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.89
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.61
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.22
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.02
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.44
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.56
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.81
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.73
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.57
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.74
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.43
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.96
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.47
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.76
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.45
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.89
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.01
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.09
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.18
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.26
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.97
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.18
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.94
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.80
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.24
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.62
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.24
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.26
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.69
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.58
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.12
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.99
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.12
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.89
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.82
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.74
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.90
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.86
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.08
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.22
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	42.33
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.39
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	23.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.91
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	17.11
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.07
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.19
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.