Gene detail

Detailed information of OS493_003596-T1 in Lophelia pertusa

Genomic Location: scaffold_7:3499707...3501093
NR annotation: KAJ7393927.1, hypothetical protein OS493_003596 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86TP1	Exopolyphosphatase PRUNE1 OS=Homo sapiens OX=9606 GN=PRUNE1 PE=1 SV=2
Q8BIW1	Exopolyphosphatase PRUNE1 OS=Mus musculus OX=10090 GN=Prune1 PE=1 SV=1
Q5E9Y6	Exopolyphosphatase PRUNE1 OS=Bos taurus OX=9913 GN=PRUNE1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008128 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02833 all species →	DHHA2	DHHA2 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038222 all species →	Homologous_superfamily	DHHA2 domain superfamily	Interproscan
IPR004097 all species →	Domain	DHHA2 domain	Interproscan
IPR038763 all species →	Homologous_superfamily	DHH phosphoesterase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12112 all species →	BNIP - RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016462 all species →	Molecular Function	pyrophosphatase activity	Interproscan
GO:0004309 all species →	Molecular Function	exopolyphosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003596-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003596-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

29.7Max TPM

3.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.37	6.47
polyp at pH7 6	18	14	3.23	8.10
coral polyp · control treatment	16	16	3.32	17.09
coral polyp · oil and dispersant treatment	16	16	3.52	29.71
coral polyp · oil treatment	16	16	2.60	4.11
coral polyp · dispersant treatment	16	15	1.49	3.45
Polyp	10	9	3.60	6.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.47
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.78
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.74
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.67
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.48
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.98
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.72
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.68
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.89
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.80
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.96
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.10
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.24
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.50
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.12
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.11
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.91
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.42
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.17
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.12
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.09
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.09
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.26
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.82
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.52
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.48
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.03
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.87
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.85
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.65
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.39
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.71
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.97
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.46
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.40
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.01
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.67
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.50
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.10
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.11
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.69
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.51
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.50
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.40
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.68
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.46
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.45
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.36
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.90
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.35
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.28
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.93
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.45
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.03
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.89
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.01
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.96
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.13
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.05
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.60
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.61
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.58
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.31
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.96
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.42
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.91
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.