Gene detail

Detailed information of OS493_003598-T1 in Lophelia pertusa

Genomic Location: scaffold_7:3506547...3507850
NR annotation: KAJ7393929.1, positive regulation of fertilization [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P0C6	LHFPL tetraspan subfamily member 2a protein OS=Danio rerio OX=7955 GN=lhfpl2a PE=2 SV=1
Q6ZUX7	LHFPL tetraspan subfamily member 2 protein OS=Homo sapiens OX=9606 GN=LHFPL2 PE=1 SV=2
Q8BGA2	LHFPL tetraspan subfamily member 2 protein OS=Mus musculus OX=10090 GN=Lhfpl2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002867 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10242 all species →	L_HMGIC_fpl	Lipoma HMGIC fusion partner-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019372 all species →	Family	Lipoma HMGIC fusion partner-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12489 all species →	LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23893	LHFPL; LHFPL tetraspan subfamily member protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003598-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

109.1Max TPM

41.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.09	57.28
polyp at pH7 6	18	18	29.56	44.93
coral polyp · control treatment	16	16	54.71	109.09
coral polyp · oil and dispersant treatment	16	16	47.83	102.28
coral polyp · oil treatment	16	16	47.85	104.24
coral polyp · dispersant treatment	16	16	56.01	84.41
Polyp	10	10	25.50	54.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.28
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.51
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.70
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.17
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.42
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.13
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.39
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.26
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.42
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.93
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.70
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.40
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.42
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.93
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.40
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.41
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.44
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.91
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.72
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.31
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.71
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.74
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.66
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.55
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.60
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.21
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.65
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.25
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.09
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.54
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.60
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.73
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.54
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.63
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.36
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.48
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.47
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.51
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.87
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.06
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.65
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	102.28
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.47
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.28
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.26
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.50
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.56
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.74
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.95
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.88
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.05
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.09
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.76
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	104.24
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.24
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.09
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.14
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.38
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.31
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.54
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.10
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.64
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.58
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.98
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.41
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.88
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.45
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.84
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.61
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.21
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.66
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.75
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.72
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.67
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.24
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.17
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.53
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	54.42
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	36.23
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	28.99
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.69
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.21
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	19.84
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	19.64
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.66
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.17

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.