Gene detail

Detailed information of OS493_003619-T1 in Lophelia pertusa

Genomic Location: scaffold_7:3711709...3725734
NR annotation: KAJ7393950.1, Protein arginine N-methyltransferase 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60678	Protein arginine N-methyltransferase 3 OS=Homo sapiens OX=9606 GN=PRMT3 PE=1 SV=4
Q922H1	Protein arginine N-methyltransferase 3 OS=Mus musculus OX=10090 GN=Prmt3 PE=1 SV=3
O70467	Protein arginine N-methyltransferase 3 OS=Rattus norvegicus OX=10116 GN=Prmt3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001240 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21137 all species →	ANM3_C2H2_Zf	Protein arginine N-methyltransferase 3, C2H2 zinc finger domain	Domain	Interproscan
PF13649 all species →	Methyltransf_25	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR049482 all species →	Domain	Protein arginine N-methyltransferase 3-like, C2H2 zinc finger domain	Interproscan
IPR041698 all species →	Domain	Methyltransferase domain 25	Interproscan
IPR025799 all species →	Family	Protein arginine N-methyltransferase	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11006 all species →	PROTEIN ARGININE N-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016274 all species →	Molecular Function	protein-arginine N-methyltransferase activity	Interproscan
GO:0018216 all species →	Biological Process	peptidyl-arginine methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11436	PRMT3; type I protein arginine methyltransferase	EC:2.1.1.319	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003619-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

17.3Max TPM

5.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.58	9.61
polyp at pH7 6	18	18	7.90	15.23
coral polyp · control treatment	16	16	4.73	8.83
coral polyp · oil and dispersant treatment	16	16	3.01	8.25
coral polyp · oil treatment	16	16	4.52	9.51
coral polyp · dispersant treatment	16	16	3.17	7.72
Polyp	10	10	7.96	17.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.61
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.58
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.53
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.32
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.30
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.10
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.88
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.57
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.08
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.58
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.17
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.14
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.07
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.06
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.20
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.23
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.17
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.55
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.95
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.90
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.13
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.59
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.39
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.98
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.98
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.96
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.91
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.81
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.98
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.83
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.85
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.10
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.09
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.36
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.38
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.50
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.04
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.49
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.92
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.77
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.58
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.56
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.25
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.70
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.28
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.55
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.65
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.33
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.23
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.54
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.06
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.51
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.31
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.90
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.55
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.49
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.88
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.85
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.81
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.09
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.39
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.73
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.72
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.54
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.59
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.81
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.92
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.42
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.90
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.27
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.90
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.69
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.55
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.90
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.72
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.26
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.10

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.