Gene detail

Detailed information of OS493_003649-T1 in Lophelia pertusa

Genomic Location: scaffold_7:4179787...4184103
NR annotation: KAJ7393978.1, AN1-type zinc finger protein 6 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SZY7	AN1-type zinc finger protein 6 OS=Bos taurus OX=9913 GN=ZFAND6 PE=2 SV=1
Q6FIF0	AN1-type zinc finger protein 6 OS=Homo sapiens OX=9606 GN=ZFAND6 PE=1 SV=2
Q5R7S6	AN1-type zinc finger protein 6 OS=Pongo abelii OX=9601 GN=ZFAND6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007310 (this species only)
Ubiquitin family	UBD\|ZnF\|ZnF_A20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01428 all species →	zf-AN1	AN1-like Zinc finger	Family	Interproscan
PF01754 all species →	zf-A20	A20-like zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050652 all species →	Family	AN1/A20 Zinc Finger	Interproscan
IPR000058 all species →	Domain	Zinc finger, AN1-type	Interproscan
IPR002653 all species →	Domain	Zinc finger, A20-type	Interproscan
IPR035896 all species →	Homologous_superfamily	AN1-like Zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10634 all species →	AN1-TYPE ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003649-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003649-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

687.7Max TPM

112.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	30.00	48.23
polyp at pH7 6	18	18	31.62	46.24
coral polyp · control treatment	16	16	81.31	179.29
coral polyp · oil and dispersant treatment	16	16	174.10	336.59
coral polyp · oil treatment	16	16	66.42	107.19
coral polyp · dispersant treatment	16	16	364.73	687.69
Polyp	10	10	25.39	41.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.43
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.55
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.26
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.75
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.65
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.07
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.64
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.05
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.43
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.53
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.24
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.85
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.64
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.08
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.10
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.18
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.55
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.22
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.50
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.60
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.34
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.27
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.59
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	179.29
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	144.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.74
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.71
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.44
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.38
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.32
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.41
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.48
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.99
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.77
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.07
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.36
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.47
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.66
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	336.59
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	262.10
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	259.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	248.73
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	224.50
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	209.52
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	201.59
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	156.46
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	154.10
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.41
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	128.58
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.67
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.77
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.71
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.96
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	107.19
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	101.38
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	95.03
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.80
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.51
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.99
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.37
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.01
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.39
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.23
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.78
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	687.69
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	610.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	539.45
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	489.38
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	485.19
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	439.56
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	422.02
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	409.72
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	392.32
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	331.93
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	285.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	272.28
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	258.65
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	163.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.50
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.10
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	41.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	32.84
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	30.72
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	30.03
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	24.52
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	24.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.04
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	20.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.16
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.37

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.