Gene detail

Detailed information of OS493_003664-T1 in Lophelia pertusa

Genomic Location: scaffold_7:4404492...4422009
NR annotation: KAJ7393993.1, Leucine-rich repeat-containing protein 71 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N4P6	Leucine-rich repeat-containing protein 71 OS=Homo sapiens OX=9606 GN=LRRC71 PE=1 SV=1
Q9D3W5	Leucine-rich repeat-containing protein 71 OS=Mus musculus OX=10090 GN=Lrrc71 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002478 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR053040 all species →	Family	Leucine-rich repeat-containing protein 71	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46984 all species →	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 71	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003664-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003664-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

120.4Max TPM

30.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	33.05	50.37
polyp at pH7 6	18	18	30.75	62.03
coral polyp · control treatment	16	16	33.28	120.38
coral polyp · oil and dispersant treatment	16	16	22.39	81.96
coral polyp · oil treatment	16	16	29.42	45.75
coral polyp · dispersant treatment	16	16	17.97	27.42
Polyp	10	10	52.53	106.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.37
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.80
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.73
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.70
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.73
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.33
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.42
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.47
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.98
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.47
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.65
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.94
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.40
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.21
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.26
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.99
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.50
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.86
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.60
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.95
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.98
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.33
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.69
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.94
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.80
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	120.38
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.70
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.14
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.24
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.05
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.85
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.38
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.62
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.95
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.20
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.85
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.06
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.87
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.48
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.15
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.96
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.04
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.95
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.48
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.53
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.90
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.74
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.58
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.04
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.66
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.03
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.11
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.08
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.55
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.52
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.46
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.10
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.48
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.05
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.91
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.04
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.41
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.94
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.32
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.17
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.51
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.51
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.42
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.03
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.77
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.40
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.29
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.37
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.38
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.36
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.17
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.80
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.41
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.87
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	106.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	69.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	59.92
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	58.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	54.94
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	50.51
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	44.94
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	34.01
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	29.81
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.59

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.