Gene detail

Detailed information of OS493_003667-T1 in Lophelia pertusa

Genomic Location: scaffold_7:4448806...4472443
NR annotation: KAJ7393996.1, Methanethiol oxidase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q569D5	Methanethiol oxidase OS=Xenopus tropicalis OX=8364 GN=selenbp1 PE=2 SV=1
Q2KJ32	Methanethiol oxidase OS=Bos taurus OX=9913 GN=SELENBP1 PE=1 SV=1
Q8VIF7	Methanethiol oxidase OS=Rattus norvegicus OX=10116 GN=Selenbp1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001897 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05694 all species →	SBP56	56kDa selenium binding protein (SBP56)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR008826 all species →	Family	Selenium-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23300 all species →	METHANETHIOL OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008430 all species →	Molecular Function	selenium binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17285	SELENBP1; methanethiol oxidase	EC:1.8.3.4	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003667-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

65.8Max TPM

22.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	19.99	29.13
polyp at pH7 6	18	18	27.36	42.96
coral polyp · control treatment	16	16	23.61	65.80
coral polyp · oil and dispersant treatment	16	16	22.76	52.63
coral polyp · oil treatment	16	16	20.32	41.90
coral polyp · dispersant treatment	16	16	24.74	53.68
Polyp	10	10	20.28	38.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.13
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.83
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.99
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.67
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.53
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.29
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.16
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.08
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.36
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.76
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.52
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.16
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.88
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.96
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.08
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.65
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.39
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.66
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.31
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.40
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.89
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.13
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.37
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.80
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.35
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.72
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.03
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.50
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.33
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.76
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.27
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.12
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.62
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.21
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.01
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.32
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.44
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.63
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.76
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.10
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.45
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.69
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.50
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.47
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.16
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.82
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.73
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.30
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.93
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.85
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.90
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.04
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.92
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.42
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.48
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.44
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.04
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.49
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.22
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.29
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.68
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.19
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.38
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.96
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.46
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.20
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.91
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.69
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.10
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.58
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.75
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.14
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.28
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	38.38
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	36.72
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	32.06
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	26.69
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.55
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.59
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.18
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.85
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.57

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.