Gene detail

Detailed information of OS493_003673-T1 in Lophelia pertusa

Genomic Location: scaffold_7:4555508...4559695
NR annotation: KAJ7394002.1, Signal peptidase complex catalytic subunit S11A [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R0P6	Signal peptidase complex catalytic subunit SEC11A OS=Mus musculus OX=10090 GN=Sec11a PE=1 SV=1
P67810	Signal peptidase complex catalytic subunit SEC11A OS=Bos taurus OX=9913 GN=SEC11A PE=2 SV=1
P67811	Signal peptidase complex catalytic subunit SEC11A OS=Canis lupus familiaris OX=9615 GN=SEC11A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006721 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00717 all species →	Peptidase_S24	Peptidase S24-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019533 all species →	Domain	Peptidase S26	Interproscan
IPR001733 all species →	Family	Peptidase S26B	Interproscan
IPR019756 all species →	Active_site	Peptidase S26A, signal peptidase I, serine active site	Interproscan
IPR036286 all species →	Homologous_superfamily	LexA/Signal peptidase-like superfamily	Interproscan
IPR019758 all species →	Conserved_site	Peptidase S26A, signal peptidase I, conserved site	Interproscan
IPR015927 all species →	Domain	Peptidase S24/S26A/S26B/S26C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10806 all species →	SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006465 all species →	Biological Process	signal peptide processing	Interproscan
GO:0005787 all species →	Cellular Component	signal peptidase complex	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13280	SEC11, sipW; signal peptidase I	EC:3.4.21.89	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003673-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

184.2Max TPM

90.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	76.24	144.93
polyp at pH7 6	18	18	82.22	152.90
coral polyp · control treatment	16	16	110.91	149.11
coral polyp · oil and dispersant treatment	16	16	91.48	136.02
coral polyp · oil treatment	16	16	102.12	156.90
coral polyp · dispersant treatment	16	16	71.39	110.86
Polyp	10	10	106.65	184.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	144.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	130.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	85.58
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	83.48
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	83.29
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.86
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.14
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.81
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.63
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.56
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.61
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.41
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.77
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.81
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.50
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.38
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	152.90
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	140.36
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	97.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.28
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.96
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.95
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.86
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.34
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.14
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.60
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.74
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.42
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.69
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.71
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.16
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	149.11
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	144.21
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	139.48
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	132.86
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	125.62
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	118.52
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	115.01
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.75
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	108.12
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	105.07
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	100.25
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	97.84
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	91.69
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.26
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	136.02
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	128.01
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	114.06
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.73
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	96.97
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.67
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.38
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.54
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.09
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.90
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.72
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.51
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.58
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.68
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	156.90
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	139.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	137.40
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	119.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	113.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	110.63
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	107.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	99.69
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	99.39
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	96.82
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	95.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.75
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.90
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.22
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.86
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	108.80
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.99
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.28
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.59
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.83
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.02
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.94
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.35
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.38
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.02
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	184.24
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	134.45
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	128.03
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	117.33
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	117.32
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	86.39
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	86.19
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	85.47
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	69.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	57.97

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.