Gene detail

Detailed information of OS493_003686-T1 in Lophelia pertusa

Genomic Location: scaffold_7:4758225...4764186
NR annotation: KAJ7394014.1, hypothetical protein OS493_003686 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08388	Phosphatidylethanolamine N-methyltransferase OS=Rattus norvegicus OX=10116 GN=Pemt PE=1 SV=2
C8VRV0	Phosphatidyl-N-methylethanolamine N-methyltransferase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=choC PE=3 SV=1
P05375	Phosphatidyl-N-methylethanolamine N-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=OPI3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011131 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04191 all species →	PEMT	Phospholipid methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024960 all species →	Family	Phosphatidyl-N-methylethanolamine/Phosphatidylethanolamine N-methyltransferase	Interproscan
IPR007318 all species →	Family	Phospholipid methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15458 all species →	PHOSPHATIDYLETHANOLAMINE N-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004608 all species →	Molecular Function	phosphatidylethanolamine N-methyltransferase activity	Interproscan
GO:0006656 all species →	Biological Process	phosphatidylcholine biosynthetic process	Interproscan
GO:0008757 all species →	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00551	PEMT; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase	EC:2.1.1.17 EC:2.1.1.71	Glycerophospholipid metabolism	ko00564	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003686-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

52.3Max TPM

22.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.87	47.51
polyp at pH7 6	18	18	28.38	45.91
coral polyp · control treatment	16	16	23.80	45.41
coral polyp · oil and dispersant treatment	16	16	13.75	22.97
coral polyp · oil treatment	16	16	21.41	33.43
coral polyp · dispersant treatment	16	16	11.89	24.96
Polyp	10	10	34.42	52.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.51
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.62
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.87
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.28
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.11
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.59
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.76
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.44
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.33
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.77
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.60
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.88
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.91
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.10
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.04
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.56
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.44
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.83
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.65
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.56
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.12
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.10
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.09
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.94
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.70
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.80
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.76
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.34
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.36
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.47
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.81
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.97
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.02
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.93
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.38
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.38
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.96
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.56
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.34
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.23
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.61
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.59
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.44
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.43
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.67
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.93
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.92
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.43
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.19
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.04
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.77
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.76
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.16
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.77
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.72
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.37
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.77
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.96
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.07
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.99
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.24
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.67
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.81
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.51
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.87
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.83
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.81
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	52.33
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	42.08
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	40.04
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	36.82
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	35.73
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	34.82
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	31.27
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	29.63
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	24.11
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	17.40

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.