Gene detail

Detailed information of OS493_003692-T1 in Lophelia pertusa

Genomic Location: scaffold_7:4829802...4840610
NR annotation: KAJ7394019.1, hypothetical protein OS493_003692 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60320	Protein ENTREP2 OS=Homo sapiens OX=9606 GN=ENTREP2 PE=1 SV=4
Q6A044	Protein ENTREP2 OS=Mus musculus OX=10090 GN=Entrep2 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009648 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04103 all species →	CD20	CD20-like family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007237 all species →	Family	CD20-like family	Interproscan
IPR030431 all species →	Family	Endosomal transmembrane epsin interactor 1-3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17615 all species →	PROTEIN FAM189A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003692-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003692-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

31.8Max TPM

11.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.43	17.93
polyp at pH7 6	18	18	8.47	15.65
coral polyp · control treatment	16	16	15.25	31.76
coral polyp · oil and dispersant treatment	16	16	11.66	18.77
coral polyp · oil treatment	16	16	12.42	24.29
coral polyp · dispersant treatment	16	16	11.82	24.19
Polyp	10	10	7.40	14.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.93
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.08
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.25
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.21
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.99
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.92
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.84
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.13
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.13
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.15
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.50
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.07
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.88
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.92
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.65
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.73
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.42
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.65
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.41
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.06
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.01
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.76
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.97
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.36
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.86
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.77
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.63
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.76
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.27
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.84
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.25
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.10
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.34
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.85
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.24
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.20
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.84
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.79
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.71
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.35
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.04
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.33
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.74
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.19
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.55
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.01
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.97
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.77
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.05
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.55
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.79
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.61
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.14
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.67
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.88
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.69
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.90
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.26
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.19
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.68
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.49
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.90
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.70
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.48
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.72
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.97
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.89
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.98
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.41
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.08
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.54
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.98
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.51
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.33
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.26

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.