Gene detail

Detailed information of OS493_003700-T1 in Lophelia pertusa

Genomic Location: scaffold_7:4954284...4957750
NR annotation: KAJ7394027.1, hypothetical protein OS493_003700 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P50594	Protein mago nashi homolog OS=Gallus gallus OX=9031 GN=MAGOH PE=2 SV=2
Q0VC92	Protein mago nashi homolog 2 OS=Bos taurus OX=9913 GN=MAGOHB PE=2 SV=1
Q9CQL1	Protein mago nashi homolog 2 OS=Mus musculus OX=10090 GN=Magohb PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007516 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02792 all species →	Mago_nashi	Mago nashi protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004023 all species →	Family	Mago nashi protein	Interproscan
IPR036605 all species →	Homologous_superfamily	Mago nashi superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12638 all species →	PROTEIN MAGO NASHI HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008380 all species →	Biological Process	RNA splicing	Interproscan
GO:0035145 all species →	Cellular Component	exon-exon junction complex	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12877	MAGOH; protein mago nashi	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003700-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

164.9Max TPM

47.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	42.92	78.98
polyp at pH7 6	18	18	50.00	88.96
coral polyp · control treatment	16	16	53.73	92.15
coral polyp · oil and dispersant treatment	16	16	45.74	97.61
coral polyp · oil treatment	16	16	45.79	84.14
coral polyp · dispersant treatment	16	16	34.01	73.90
Polyp	10	10	70.82	164.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.98
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.48
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.82
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.93
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.56
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.17
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.85
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.70
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.82
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.68
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.84
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.38
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.96
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.40
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.37
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.17
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.36
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.56
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.97
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.27
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.54
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.48
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.14
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.75
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.15
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.54
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.14
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.42
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.39
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.25
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.75
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.83
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.74
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.13
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.78
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.99
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.71
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.61
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.63
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.04
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.60
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.90
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.03
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.29
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.02
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.07
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.05
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.26
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.64
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.33
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.14
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.01
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.85
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.01
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.30
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.69
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.40
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.42
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.29
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.53
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.26
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.28
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.03
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.90
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.12
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.12
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.35
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.29
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.92
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.76
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.11
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.39
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.08
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	164.89
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	100.20
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	87.85
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	84.51
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	63.68
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	61.05
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	51.61
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	46.13
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	24.63
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	23.67

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.