Gene detail

Detailed information of OS493_003705-T1 in Lophelia pertusa

Genomic Location: scaffold_7:4990261...4992669
NR annotation: KAJ7394032.1, Transcription initiation factor IIA subunit 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P52657	Transcription initiation factor IIA subunit 2 OS=Homo sapiens OX=9606 GN=GTF2A2 PE=1 SV=1
Q80ZM7	Transcription initiation factor IIA subunit 2 OS=Mus musculus OX=10090 GN=Gtf2a2 PE=1 SV=2
O08950	Transcription initiation factor IIA subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2a2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008543 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02751 all species →	TFIIA_gamma_C	Transcription initiation factor IIA, gamma subunit	Domain	Interproscan
PF02268 all species →	TFIIA_gamma_N	Transcription initiation factor IIA, gamma subunit, helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003194 all species →	Family	Transcription initiation factor IIA, gamma subunit	Interproscan
IPR015871 all species →	Domain	Transcription initiation factor IIA, gamma subunit, C-terminal	Interproscan
IPR015872 all species →	Domain	Transcription initiation factor IIA, gamma subunit, N-terminal	Interproscan
IPR009088 all species →	Homologous_superfamily	Transcription factor IIA, beta-barrel	Interproscan
IPR009083 all species →	Homologous_superfamily	Transcription factor IIA, alpha-helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10966 all species →	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005672 all species →	Cellular Component	transcription factor TFIIA complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0017025 all species →	Molecular Function	TBP-class protein binding	Interproscan
GO:0051123 all species →	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03123	TFIIA2, GTF2A2, TOA2; transcription initiation factor TFIIA small subunit	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_003705-T1 global co-expression network