Gene detail

Detailed information of OS493_003762-T1 in Lophelia pertusa

Genomic Location: scaffold_7:5665181...5670952
NR annotation: KAJ7394086.1, hypothetical protein OS493_003762 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011443 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06211 all species →	BAMBI	BMP and activin membrane-bound inhibitor (BAMBI) N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045860 all species →	Homologous_superfamily	Snake toxin-like superfamily	Interproscan
IPR045807 all species →	Domain	BMP and activin membrane-bound inhibitor, N-terminal domain	Interproscan
IPR016054 all species →	Domain	Ly-6 antigen/uPA receptor-like	Interproscan

PANTHER

No PANTHER signature was detected for OS493_003762-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_003762-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003762-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003762-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

44.6Max TPM

16.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.12	38.08
polyp at pH7 6	18	18	17.58	40.56
coral polyp · control treatment	16	16	21.21	44.62
coral polyp · oil and dispersant treatment	16	15	12.13	28.80
coral polyp · oil treatment	16	16	15.80	34.20
coral polyp · dispersant treatment	16	16	10.88	34.00
Polyp	10	10	22.10	34.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.08
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.67
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.56
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.49
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.88
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.99
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.05
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.34
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.87
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.41
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.56
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.11
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.08
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.17
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.65
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.20
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.03
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.76
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.71
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.23
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.62
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.91
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.92
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.49
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.59
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.30
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.30
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.80
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.65
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.26
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.70
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.16
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.64
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.80
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.12
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.24
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.98
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.87
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.94
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.03
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.97
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.52
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.08
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.06
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.18
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.23
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.07
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.69
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.01
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.25
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.55
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.89
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.12
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.92
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.48
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.34
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.81
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.59
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.33
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.19
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.53
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.26
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.84
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.36
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.77
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.70
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	34.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	32.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	29.67
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	26.77
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	25.03
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	19.45
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.78
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.58
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.23

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.