Gene detail

Detailed information of OS493_003777-T1 in Lophelia pertusa

Genomic Location: scaffold_7:5819777...5829475
NR annotation: KAJ7394101.1, Methyltransferase-like protein 13 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NTR1	eEF1A lysine and N-terminal methyltransferase OS=Xenopus laevis OX=8355 GN=mettl13 PE=2 SV=1
Q8N6R0	eEF1A lysine and N-terminal methyltransferase OS=Homo sapiens OX=9606 GN=METTL13 PE=1 SV=1
A5PK19	eEF1A lysine and N-terminal methyltransferase OS=Bos taurus OX=9913 GN=METTL13 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006733 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13649 all species →	Methyltransf_25	Methyltransferase domain	Domain	Interproscan
PF01564 all species →	Spermine_synth	Spermine/spermidine synthase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR041698 all species →	Domain	Methyltransferase domain 25	Interproscan
IPR030374 all species →	Domain	Polyamine biosynthesis domain	Interproscan
IPR051419 all species →	Family	Lysine/N-terminal Methyltransferase Superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12176 all species →	SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_003777-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25166	EEF1AKNMT, METTL13; eEF1A lysine and N-terminal methyltransferase	EC:2.1.1.-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003777-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

77.7Max TPM

16.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.35	26.26
polyp at pH7 6	18	18	13.33	31.57
coral polyp · control treatment	16	16	16.05	31.04
coral polyp · oil and dispersant treatment	16	16	14.32	29.05
coral polyp · oil treatment	16	16	22.46	32.41
coral polyp · dispersant treatment	16	16	8.62	19.59
Polyp	10	10	37.31	77.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.26
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.77
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.06
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.01
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.60
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.13
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.18
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.65
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.50
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.49
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.57
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.77
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.41
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.81
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.35
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.89
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.82
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.43
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.05
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.78
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.30
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.11
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.20
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.04
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.54
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.33
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.59
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.80
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.15
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.32
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.74
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.35
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.69
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.33
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.28
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.90
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.76
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.06
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.71
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.70
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.62
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.44
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.49
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.41
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.87
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.31
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.57
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.86
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.18
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.08
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.90
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.74
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.68
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.37
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.79
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.64
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.55
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.60
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.12
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.90
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.96
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.21
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.64
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.61
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.14
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.87
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	77.70
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	62.44
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	48.86
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	44.01
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	43.30
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	31.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	31.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.40
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.66

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.