Gene detail

Detailed information of OS493_003778-T1 in Lophelia pertusa

Genomic Location: scaffold_7:5836584...5838981
NR annotation: KAJ7394102.1, Ornithine decarboxylase antizyme 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54369	Ornithine decarboxylase antizyme 1 OS=Mus musculus OX=10090 GN=Oaz1 PE=1 SV=3
P70112	Ornithine decarboxylase antizyme 1 OS=Mesocricetus auratus OX=10036 GN=OAZ1 PE=2 SV=3
O42148	Ornithine decarboxylase antizyme 1 OS=Gallus gallus OX=9031 GN=OAZ PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010135 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02100 all species →	ODC_AZ	Ornithine decarboxylase antizyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038581 all species →	Homologous_superfamily	Ornithine decarboxylase antizyme superfamily	Interproscan
IPR002993 all species →	Family	Ornithine decarboxylase antizyme	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10279 all species →	ORNITHINE DECARBOXYLASE ANTIZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008073 all species →	Molecular Function	ornithine decarboxylase inhibitor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0045732 all species →	Biological Process	positive regulation of protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003778-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003778-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

75.0Max TPM

38.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	26.90	43.67
polyp at pH7 6	18	18	24.35	37.16
coral polyp · control treatment	16	16	53.32	73.44
coral polyp · oil and dispersant treatment	16	16	47.40	58.87
coral polyp · oil treatment	16	16	56.40	75.03
coral polyp · dispersant treatment	16	16	26.00	50.67
Polyp	10	10	34.64	53.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.67
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.67
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.46
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.31
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.00
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.70
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.33
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.12
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.81
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.35
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.18
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.61
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.12
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.20
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.56
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.16
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.46
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.40
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.70
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.49
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.31
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.96
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.84
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.61
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.14
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.11
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.42
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.38
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.85
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.63
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.76
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.97
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.88
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.64
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.57
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.18
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.68
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.75
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.82
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.17
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.54
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.57
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.16
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.87
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.08
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.72
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.29
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.18
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.96
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.26
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.32
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.15
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.78
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.49
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.02
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.88
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.94
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.01
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.03
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.84
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.81
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.26
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.73
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.38
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.83
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.78
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.02
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.98
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.78
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.58
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.26
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.13
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.17
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.87
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.13
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.07
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.27
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.03
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.74
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	53.86
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	52.85
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	49.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	45.30
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	41.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	29.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	27.52
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	18.16
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.37
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.97

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.