Gene detail

Detailed information of OS493_003793-T1 in Lophelia pertusa

Genomic Location: scaffold_7:6016306...6017945
NR annotation: KAJ7394115.1, 39S ribosomal protein L14, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZUH5	Large ribosomal subunit protein uL14m OS=Danio rerio OX=7955 GN=mrpl14 PE=2 SV=1
Q7M0E7	Large ribosomal subunit protein uL14m OS=Rattus norvegicus OX=10116 GN=Mrpl14 PE=1 SV=2
Q9D1I6	Large ribosomal subunit protein uL14m OS=Mus musculus OX=10090 GN=Mrpl14 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008807 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00238 all species →	Ribosomal_L14	Ribosomal protein L14p/L23e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036853 all species →	Homologous_superfamily	Large ribosomal subunit protein uL14 superfamily	Interproscan
IPR000218 all species →	Family	Large ribosomal subunit protein uL14	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_003793-T1 in Lophelia pertusa.

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02874	RP-L14, MRPL14, rplN; large subunit ribosomal protein L14	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003793-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

47.3Max TPM

10.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.52	24.54
polyp at pH7 6	18	18	12.48	21.21
coral polyp · control treatment	16	16	9.76	23.81
coral polyp · oil and dispersant treatment	16	16	7.27	26.11
coral polyp · oil treatment	16	16	10.17	13.64
coral polyp · dispersant treatment	16	16	4.12	10.79
Polyp	10	10	23.72	47.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.54
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.25
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.56
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.98
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.61
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.60
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.56
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.41
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.08
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.81
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.94
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.87
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.69
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.14
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.21
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.47
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.77
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.76
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.15
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.39
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.15
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.92
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.92
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.17
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.05
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.50
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.47
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.37
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.32
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.85
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.85
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.35
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.34
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.88
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.81
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.18
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.15
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.06
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.58
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.11
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.23
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.47
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.81
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.66
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.10
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.90
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.37
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.25
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.33
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.28
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.64
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.30
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.18
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.15
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.95
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.82
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.21
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.81
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.02
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.64
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.28
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.79
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.42
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.90
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.86
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.74
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.52
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.54
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.69
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.54
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.22
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	47.27
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	30.82
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.59
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	24.90
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.57
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.35
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	14.22
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.69

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.