Gene detail

Detailed information of OS493_003800-T1 in Lophelia pertusa

Genomic Location: scaffold_7:6067466...6072425
NR annotation: KAJ7394122.1, hypothetical protein OS493_003800 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3V2A7	Glutamine-rich protein 2 OS=Mus musculus OX=10090 GN=Qrich2 PE=2 SV=1
Q9H0J4	Glutamine-rich protein 2 OS=Homo sapiens OX=9606 GN=QRICH2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001084 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16043 all species →	DUF4795	Domain of unknown function (DUF4795)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032013 all species →	Domain	Domain of unknown function DUF4795	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46766 all species →	GLUTAMINE-RICH PROTEIN 2	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_003800-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003800-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003800-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

43.3Max TPM

8.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.18	16.41
polyp at pH7 6	18	18	7.52	11.55
coral polyp · control treatment	16	16	13.17	43.33
coral polyp · oil and dispersant treatment	16	16	8.72	26.77
coral polyp · oil treatment	16	16	12.22	25.75
coral polyp · dispersant treatment	16	16	5.92	12.12
Polyp	10	9	4.30	11.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.57
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.23
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.50
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.32
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.10
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.50
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.48
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.12
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.71
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.08
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.34
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.50
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.30
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.72
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.50
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.56
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.88
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.34
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.33
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.41
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.27
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.15
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.73
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.98
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.32
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.19
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.85
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.63
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.88
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.49
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.09
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.55
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.32
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.38
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.38
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.07
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.40
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.03
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.75
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.23
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.89
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.32
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.43
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.42
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.18
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.63
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.69
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.96
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.99
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.73
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.12
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.30
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.03
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.03
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.25
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.20
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.30
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.69
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.24
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.13
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.01
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.60
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.06
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.49
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.37
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.52
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.06
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.13
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.