Gene detail

Detailed information of OS493_003811-T1 in Lophelia pertusa

Genomic Location: scaffold_7:6160614...6165356
NR annotation: KAJ7394133.1, hypothetical protein OS493_003811 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000108 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_003811-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR018363 all species →	Conserved_site	CD59 antigen, conserved site	Interproscan
IPR045860 all species →	Homologous_superfamily	Snake toxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10036 all species →	CD59 GLYCOPROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_003811-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003811-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003811-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

710.6Max TPM

150.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	44.67	75.12
polyp at pH7 6	18	18	67.98	137.56
coral polyp · control treatment	16	16	191.32	528.39
coral polyp · oil and dispersant treatment	16	16	317.33	710.56
coral polyp · oil treatment	16	16	142.80	302.33
coral polyp · dispersant treatment	16	16	179.71	456.86
Polyp	10	10	126.21	355.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.12
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.66
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.78
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.46
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.98
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.04
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.98
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.92
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.93
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.89
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.15
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.55
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.40
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	137.56
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	134.79
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	101.71
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	100.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.07
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.63
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.83
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.97
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.56
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.65
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.26
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.98
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	528.39
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	313.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	299.78
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	274.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	229.30
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	193.97
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	191.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	173.22
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	159.91
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	150.95
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	142.40
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	119.30
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	110.97
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	91.64
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.33
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	710.56
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	609.60
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	460.85
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	431.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	395.83
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	388.47
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	362.06
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	349.36
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	327.59
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	275.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	242.68
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	214.46
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	165.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.96
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.17
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.72
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	302.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	250.60
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	224.51
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	201.55
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	191.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	187.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	183.63
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	142.15
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	138.08
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	135.22
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	134.24
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	96.52
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.51
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.82
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.94
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.91
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	456.86
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	380.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	219.29
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	216.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	210.54
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	202.81
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	196.36
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	179.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	152.60
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	149.26
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	131.35
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	119.02
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	98.55
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.59
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	355.08
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	293.68
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	136.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	127.23
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	122.83
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	98.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	67.62
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	29.14
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	26.85
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.18

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.