Gene detail

Detailed information of OS493_003840-T1 in Lophelia pertusa

Genomic Location: scaffold_7:6356415...6357317
NR annotation: KAJ7394161.1, Prostaglandin G/H synthase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9C9U3	Alpha-dioxygenase 2 OS=Arabidopsis thaliana OX=3702 GN=DOX2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002459 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03098 all species →	An_peroxidase	Animal haem peroxidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037120 all species →	Homologous_superfamily	Haem peroxidase domain superfamily, animal type	Interproscan
IPR050783 all species →	Family	Oxylipin biosynthesis and metabolism	Interproscan
IPR019791 all species →	Family	Haem peroxidase, animal-type	Interproscan
IPR010255 all species →	Homologous_superfamily	Haem peroxidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11903 all species →	PROSTAGLANDIN G/H SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004666 all species →	Molecular Function	prostaglandin-endoperoxide synthase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0019371 all species →	Biological Process	cyclooxygenase pathway	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0004601 all species →	Molecular Function	peroxidase activity	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003840-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003840-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

28.2Max TPM

9.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.37	15.65
polyp at pH7 6	18	16	8.05	19.73
coral polyp · control treatment	16	16	10.24	22.76
coral polyp · oil and dispersant treatment	16	16	12.57	28.25
coral polyp · oil treatment	16	16	14.67	26.27
coral polyp · dispersant treatment	16	16	9.62	23.99
Polyp	10	8	3.03	13.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.65
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.50
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.84
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.37
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.55
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.15
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.95
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.70
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.93
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.73
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.74
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.26
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.91
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.65
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.04
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.01
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.94
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.98
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.19
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.13
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.82
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.16
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.06
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.37
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.20
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.83
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.21
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.76
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.41
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.13
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.25
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.58
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.01
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.15
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.19
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.29
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.39
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.60
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.96
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.69
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.81
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.74
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.12
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.58
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.77
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.68
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.13
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.43
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.92
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.40
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.17
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.77
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.14
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.99
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.58
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.66
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.68
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.08
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.41
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.87
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.48
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.23
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.48
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.52
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.76
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.92
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.50
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.37
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.67
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.58
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.