Gene detail

Detailed information of OS493_003841-T1 in Lophelia pertusa

Genomic Location: scaffold_7:6357985...6362172
NR annotation: KAJ7394162.1, Prostaglandin G/H synthase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002459 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03098 all species →	An_peroxidase	Animal haem peroxidase	Domain	Interproscan
PF01822 all species →	WSC	WSC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019791 all species →	Family	Haem peroxidase, animal-type	Interproscan
IPR002889 all species →	Domain	Carbohydrate-binding WSC	Interproscan
IPR037120 all species →	Homologous_superfamily	Haem peroxidase domain superfamily, animal type	Interproscan
IPR010255 all species →	Homologous_superfamily	Haem peroxidase superfamily	Interproscan
IPR050783 all species →	Family	Oxylipin biosynthesis and metabolism	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11903 all species →	PROSTAGLANDIN G/H SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004601 all species →	Molecular Function	peroxidase activity	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0004666 all species →	Molecular Function	prostaglandin-endoperoxide synthase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0019371 all species →	Biological Process	cyclooxygenase pathway	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003841-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003841-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

21.1Max TPM

6.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.38	10.66
polyp at pH7 6	18	18	4.08	7.85
coral polyp · control treatment	16	16	7.61	15.36
coral polyp · oil and dispersant treatment	16	15	8.42	19.91
coral polyp · oil treatment	16	16	10.42	21.08
coral polyp · dispersant treatment	16	16	7.93	19.96
Polyp	10	8	1.71	6.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.40
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.64
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.45
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.31
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.22
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.96
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.26
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.42
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.16
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.85
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.13
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.53
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.88
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.44
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.39
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.93
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.72
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.40
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.06
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.93
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.36
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.93
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.32
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.07
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.67
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.23
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.36
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.83
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.37
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.84
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.66
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.55
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.91
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.43
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.29
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.22
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.99
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.33
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.57
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.94
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.84
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.57
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.13
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.40
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.25
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.32
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.38
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.36
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.67
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.68
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.21
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.38
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.96
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.20
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.08
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.28
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.57
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.30
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.16
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.76
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.88
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.18
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.39
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.76
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.63
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.25
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.21
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.