Gene detail

Detailed information of OS493_003843-T1 in Lophelia pertusa

Genomic Location: scaffold_7:6387684...6388923
NR annotation: KAJ7394164.1, PIH1 domain-containing protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WWB5	PIH1 domain-containing protein 2 OS=Homo sapiens OX=9606 GN=PIH1D2 PE=1 SV=1
Q5PRB3	PIH1 domain-containing protein 2 OS=Danio rerio OX=7955 GN=pih1d2 PE=2 SV=1
Q32LH3	PIH1 domain-containing protein 2 OS=Bos taurus OX=9913 GN=PIH1D2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008294 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08190 all species →	PIH1	PIH1 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050734 all species →	Family	PIH1 family, Kintoun subfamily	Interproscan
IPR012981 all species →	Domain	PIH1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22997 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000492 all species →	Biological Process	box C/D snoRNP assembly	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0097255 all species →	Cellular Component	R2TP complex	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003843-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003843-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

27.9Max TPM

7.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.31	9.43
polyp at pH7 6	18	18	5.91	11.75
coral polyp · control treatment	16	16	10.52	23.32
coral polyp · oil and dispersant treatment	16	16	8.07	27.86
coral polyp · oil treatment	16	16	7.69	17.07
coral polyp · dispersant treatment	16	16	7.44	16.40
Polyp	10	10	2.88	3.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.43
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.58
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.85
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.63
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.63
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.93
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.51
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.88
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.71
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.49
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.61
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.75
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.56
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.64
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.37
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.50
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.32
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.57
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.49
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.26
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.84
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.25
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.02
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.48
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.32
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.43
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.83
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.77
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.50
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.44
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.18
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.65
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.43
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.28
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.03
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.92
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.61
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.77
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.46
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.72
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.88
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.77
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.66
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.85
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.69
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.07
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.35
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.01
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.48
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.01
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.82
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.50
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.70
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.40
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.52
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.53
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.40
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.16
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.71
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.64
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.22
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.83
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.84
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.48
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.89
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.17
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.84
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.82
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.26

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.