Gene detail

Detailed information of OS493_003935-T1 in Lophelia pertusa

Genomic Location: scaffold_8:569918...573939
NR annotation: KAJ7386973.1, hypothetical protein OS493_003935 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007689 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07412 all species →	Geminin	Geminin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022786 all species →	Family	Geminin/Multicilin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13372 all species →	GEMININ	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006275 all species →	Biological Process	regulation of DNA replication	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008156 all species →	Biological Process	negative regulation of DNA replication	Interproscan
GO:0045786 all species →	Biological Process	negative regulation of cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10749	GMNN; geminin	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003935-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

103TPM > 0

7Conditions

76.8Max TPM

3.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	1.99	4.06
polyp at pH7 6	18	14	1.87	4.20
coral polyp · control treatment	16	16	6.64	76.78
coral polyp · oil and dispersant treatment	16	16	6.31	66.36
coral polyp · oil treatment	16	16	1.95	3.94
coral polyp · dispersant treatment	16	16	2.38	4.87
Polyp	10	9	1.72	5.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.06
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.40
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.39
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.22
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.88
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.75
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.88
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.63
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.62
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.35
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.32
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.24
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.32
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.28
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.02
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.83
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.37
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.35
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.17
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.11
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.78
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.11
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.99
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.44
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.41
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.35
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.05
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.53
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.14
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.02
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.69
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.61
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.36
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.16
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.62
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.29
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.20
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.77
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.24
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.54
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.94
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.34
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.25
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.64
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.63
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.58
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.54
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.30
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.26
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.02
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.17
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.87
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.15
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.60
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.83
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.48
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.77
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.67
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.76
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.39
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.95
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.73
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.