Detailed information of OS493_003940-T1 in Lophelia pertusa

Genomic Location: scaffold_8:624721...634572
NR annotation: KAJ7386978.1, Syntaxin-12 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5R602Syntaxin-7 OS=Pongo abelii OX=9601 GN=STX7 PE=2 SV=3
O15400Syntaxin-7 OS=Homo sapiens OX=9606 GN=STX7 PE=1 SV=4
Q3ZBT5Syntaxin-7 OS=Bos taurus OX=9913 GN=STX7 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001710 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05739
all species →		SNARESNARE domainFamilyInterproscan
PF14523
all species →		Syntaxin_2Syntaxin-like proteinDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000727
all species →		DomainTarget SNARE coiled-coil homology domainInterproscan
IPR010989
all species →		Homologous_superfamilySNAREInterproscan
IPR045242
all species →		FamilySyntaxinInterproscan
IPR006011
all species →		DomainSyntaxin, N-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19957
all species →		SYNTAXINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0016192
all species →		Biological Processvesicle-mediated transportInterproscan
GO:0000149
all species →		Molecular FunctionSNARE bindingInterproscan
GO:0005484
all species →		Molecular FunctionSNAP receptor activityInterproscan
GO:0006886
all species →		Biological Processintracellular protein transportInterproscan
GO:0006906
all species →		Biological Processvesicle fusionInterproscan
GO:0012505
all species →		Cellular Componentendomembrane systemInterproscan
GO:0016021
all species →		Cellular ComponentmembraneInterproscan
GO:0031201
all species →		Cellular ComponentSNARE complexInterproscan
GO:0048278
all species →		Biological Processvesicle dockingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_003940-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_003940-T1 global co-expression network
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