Gene detail

Detailed information of OS493_003945-T1 in Lophelia pertusa

Genomic Location: scaffold_8:692697...693026
NR annotation: KAJ7386983.1, hypothetical protein OS493_003945 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000625 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04749 all species →	PLAC8	PLAC8 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006461 all species →	Family	PLAC8 motif-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15907 all species →	DUF614 FAMILY PROTEIN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_003945-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003945-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003945-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,215.1Max TPM

504.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	367.53	525.19
polyp at pH7 6	18	18	404.91	602.12
coral polyp · control treatment	16	16	687.63	1,095.83
coral polyp · oil and dispersant treatment	16	16	635.04	1,080.90
coral polyp · oil treatment	16	16	637.31	1,215.13
coral polyp · dispersant treatment	16	16	416.76	773.84
Polyp	10	10	353.71	515.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	525.19
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	513.71
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	475.70
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	469.91
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	395.70
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	385.04
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	384.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	383.08
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	366.35
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	360.82
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	339.48
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	319.14
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	307.68
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	302.33
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	282.28
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	274.60
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	267.16
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	262.58
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	602.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	590.40
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	556.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	546.92
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	480.27
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	474.27
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	427.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	426.22
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	414.48
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	404.77
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	329.83
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	319.38
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	306.60
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	304.03
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	300.59
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	275.14
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	269.81
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	260.09
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,095.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,086.55
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,063.13
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	790.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	784.34
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	776.10
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	771.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	749.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	639.58
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	608.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	598.46
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	558.25
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	460.44
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	385.77
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	326.27
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	307.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,080.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	809.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	788.57
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	767.32
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	752.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	741.16
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	729.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	636.81
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	603.38
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	547.46
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	534.94
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	526.58
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	514.27
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	419.79
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	390.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	317.48
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,215.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	921.47
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	903.26
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	855.03
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	777.46
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	774.28
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	706.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	640.13
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	514.79
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	504.57
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	450.97
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	440.57
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	405.01
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	386.04
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	362.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	339.94
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	773.84
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	614.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	516.74
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	510.90
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	502.42
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	468.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	454.77
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	425.62
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	416.91
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	353.44
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	331.36
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	315.71
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	309.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	288.88
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	253.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	132.37
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	515.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	485.49
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	391.34
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	360.76
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	357.68
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	326.59
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	302.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	300.53
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	273.88
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	222.99

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.