Gene detail

Detailed information of OS493_003968-T1 in Lophelia pertusa

Genomic Location: scaffold_8:875602...888295
NR annotation: KAJ7387005.1, Cuedc1p [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R3V6	CUE domain-containing protein 1 OS=Mus musculus OX=10090 GN=Cuedc1 PE=2 SV=2
Q9NWM3	CUE domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CUEDC1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006654 (this species only)
Ubiquitin family	UBD\|Alpha-Helix\|CUE · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02845 all species →	CUE	CUE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR003892 all species →	Domain	Ubiquitin system component CUE	Interproscan
IPR040195 all species →	Domain	CUE domain-containing protein 1, CUE domain	Interproscan
IPR040192 all species →	Family	CUE domain-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13467 all species →	CUE DOMAIN CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_003968-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_003968-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

27.8Max TPM

10.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.01	9.97
polyp at pH7 6	18	17	6.66	11.27
coral polyp · control treatment	16	16	15.70	24.21
coral polyp · oil and dispersant treatment	16	16	14.12	27.76
coral polyp · oil treatment	16	16	11.16	18.79
coral polyp · dispersant treatment	16	16	12.70	20.55
Polyp	10	10	4.94	7.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.46
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.34
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.20
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.20
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.06
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.50
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.05
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.88
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.55
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.60
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.38
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.33
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.27
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.81
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.44
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.94
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.88
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.25
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.57
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.18
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.74
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.61
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.52
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.91
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.63
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.62
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.83
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.20
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.79
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.36
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.28
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.95
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.12
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.57
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.37
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.09
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.48
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.21
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.76
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.82
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.34
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.75
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.69
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.34
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.51
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.39
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.79
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.30
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.88
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.59
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.34
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.01
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.54
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.51
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.42
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.66
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.20
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.90
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.83
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.53
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.17
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.69
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.77
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.72
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.26
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.77
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.56
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.82
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.69
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.56
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.98
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.82
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.63
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.08
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.33
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.39
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.12
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.12
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.96
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.28
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.78

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.