Gene detail

Detailed information of OS493_004007-T1 in Lophelia pertusa

Genomic Location: scaffold_8:1338225...1342841
NR annotation: KAJ7387043.1, RNA-binding protein pop5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DB28	Ribonuclease P/MRP protein subunit POP5 OS=Mus musculus OX=10090 GN=Pop5 PE=1 SV=1
Q969H6	Ribonuclease P/MRP protein subunit POP5 OS=Homo sapiens OX=9606 GN=POP5 PE=1 SV=1
Q1JQ92	Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus OX=9913 GN=POP5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008706 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01900 all species →	RNase_P_Rpp14	Rpp14/Pop5 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002759 all species →	Family	RNase P subunit Pop5/Rpp14/Rnp2-like	Interproscan
IPR016819 all species →	Family	Ribonuclease P/MRP protein subunit Pop5	Interproscan
IPR038085 all species →	Homologous_superfamily	RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily	Interproscan
IPR052312 all species →	Family	Eukaryotic/Archaeal RNase P Protein Component 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48326 all species →	RIBONUCLEASE P_MRP PROTEIN SUBUNIT POP5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001682 all species →	Biological Process	tRNA 5'-leader removal	Interproscan
GO:0030677 all species →	Cellular Component	ribonuclease P complex	Interproscan
GO:0033204 all species →	Molecular Function	ribonuclease P RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03537	POP5; ribonuclease P/MRP protein subunit POP5	EC:3.1.26.5	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004007-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

47.0Max TPM

12.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.21	22.02
polyp at pH7 6	18	17	12.67	31.73
coral polyp · control treatment	16	16	13.77	47.01
coral polyp · oil and dispersant treatment	16	16	10.94	29.80
coral polyp · oil treatment	16	16	12.01	19.35
coral polyp · dispersant treatment	16	16	6.59	11.46
Polyp	10	10	18.49	32.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.02
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.23
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.50
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.13
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.93
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.52
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.99
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.75
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.64
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.57
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.23
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.06
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.84
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.37
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.66
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.73
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.84
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.36
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.30
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.25
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.15
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.79
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.10
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.81
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.80
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.31
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.21
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.42
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.36
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.21
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.01
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.99
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.46
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.26
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.71
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.06
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.86
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.35
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.81
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.60
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.80
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.51
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.76
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.43
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.09
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.91
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.79
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.94
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.47
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.37
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.92
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.59
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.36
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.35
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.96
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.52
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.21
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.56
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.11
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.75
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.66
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.81
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.61
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.39
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.49
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.46
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.16
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.63
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.67
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.98
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.61
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.56
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.03
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.90
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.87
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.54
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	32.94
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	30.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	24.19
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.23
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.31
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.54
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.18
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.54
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.09
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.49

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.