Gene detail

Detailed information of OS493_004009-T1 in Lophelia pertusa

Genomic Location: scaffold_8:1366589...1370891
NR annotation: KAJ7387045.1, hypothetical protein OS493_004009 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZJE4	SREBP regulating gene protein OS=Gallus gallus OX=9031 GN=SPRING PE=2 SV=1
Q503V3	SREBP regulating gene protein OS=Danio rerio OX=7955 GN=spring PE=2 SV=1
Q6GNT2	SREBP regulating gene protein OS=Xenopus laevis OX=8355 GN=spring1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009882 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10218 all species →	SPRING1	SREBP regulating gene protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019352 all species →	Family	SREBP regulating gene protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13481 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:2000640 all species →	Biological Process	positive regulation of SREBP signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004009-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004009-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

47.0Max TPM

14.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.28	27.10
polyp at pH7 6	18	17	14.36	27.13
coral polyp · control treatment	16	16	15.42	35.26
coral polyp · oil and dispersant treatment	16	16	19.39	47.02
coral polyp · oil treatment	16	16	14.31	26.16
coral polyp · dispersant treatment	16	16	12.36	25.64
Polyp	10	9	7.94	13.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.10
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.65
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.78
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.92
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.17
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.10
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.63
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.62
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.60
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.68
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.42
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.45
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.72
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.59
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.13
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.74
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.26
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.88
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.33
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.91
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.71
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.22
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.80
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.26
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.35
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.90
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.83
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.65
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.99
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.91
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.88
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.32
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.44
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.02
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.68
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.32
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.12
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.59
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.90
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.33
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.64
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.97
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.29
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.46
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.71
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.71
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.70
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.64
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.16
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.01
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.83
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.79
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.36
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.18
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.72
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.33
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.69
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.25
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.69
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.64
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.48
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.48
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.22
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.54
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.53
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.48
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.64
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.17
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.65
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.53
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.70
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.13
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.17
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.83
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.89
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.53
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.41
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.