Gene detail

Detailed information of OS493_004040-T1 in Lophelia pertusa

Genomic Location: scaffold_8:1730141...1734532
NR annotation: KAJ7387076.1, Cyclopentanone 1,2-monooxygenase (CPMO) [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K4C0	Flavin-containing monooxygenase 5 OS=Rattus norvegicus OX=10116 GN=Fmo5 PE=1 SV=3
P97872	Flavin-containing monooxygenase 5 OS=Mus musculus OX=10090 GN=Fmo5 PE=1 SV=4
Q04799	Flavin-containing monooxygenase 5 OS=Oryctolagus cuniculus OX=9986 GN=FMO5 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000875 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00743 all species →	FMO-like	Flavin-binding monooxygenase-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000960 all species →	Family	Flavin monooxygenase FMO	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR002253 all species →	Family	Flavin monooxygenase (FMO) 1	Interproscan
IPR050346 all species →	Family	Flavin-containing Monooxygenases	Interproscan
IPR020946 all species →	Family	Flavin monooxygenase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23023 all species →	DIMETHYLANILINE MONOOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan
GO:0004499 all species →	Molecular Function	N,N-dimethylaniline monooxygenase activity	Interproscan
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00485	FMO; dimethylaniline monooxygenase (N-oxide forming) / hypotaurine monooxygenase	EC:1.14.13.8 EC:1.8.1.-	Drug metabolism - cytochrome P450	ko00982	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004040-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

9.9Max TPM

2.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	1.90	3.46
polyp at pH7 6	18	17	2.09	4.57
coral polyp · control treatment	16	16	3.84	9.88
coral polyp · oil and dispersant treatment	16	16	2.49	6.06
coral polyp · oil treatment	16	16	3.24	7.68
coral polyp · dispersant treatment	16	16	2.67	8.83
Polyp	10	9	1.27	3.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.46
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.79
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.61
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.04
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.89
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.74
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.21
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.63
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.57
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.57
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.90
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.79
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.21
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.97
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.44
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.42
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.21
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.20
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.15
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.46
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.15
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.88
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.61
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.88
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.40
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.02
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.24
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.78
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.33
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.41
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.75
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.64
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.51
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.74
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.06
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.17
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.08
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.51
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.67
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.62
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.52
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.70
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.61
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.50
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.45
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.82
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.48
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.68
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.91
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.04
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.73
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.57
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.15
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.79
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.47
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.18
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.16
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.11
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.89
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.50
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.94
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.29
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.36
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.71
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.62
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.29
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.49
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.47
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.45
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.85
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.14
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.80
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.78
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.67
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.53
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.44
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.