Gene detail

Detailed information of OS493_004058-T1 in Lophelia pertusa

Genomic Location: scaffold_8:1854722...1859641
NR annotation: KAJ7387094.1, Protein phosphatase PTC7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U3N5	Protein phosphatase PTC7 homolog OS=Danio rerio OX=7955 GN=pptc7 PE=2 SV=1
Q8NI37	Protein phosphatase PTC7 homolog OS=Homo sapiens OX=9606 GN=PPTC7 PE=1 SV=1
Q6NVE9	Protein phosphatase PTC7 homolog OS=Mus musculus OX=10090 GN=Pptc7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007537 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13672 all species →	PP2C_2	Protein phosphatase 2C	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001932 all species →	Domain	PPM-type phosphatase-like domain	Interproscan
IPR036457 all species →	Homologous_superfamily	PPM-type phosphatase-like domain superfamily	Interproscan
IPR039123 all species →	Family	Protein phosphatase PTC7 homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12320 all species →	PROTEIN PHOSPHATASE 2C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004722 all species →	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17508	PTC7, PPTC7; protein phosphatase PTC7	EC:3.1.3.16	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004058-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

53.9Max TPM

23.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.11	25.77
polyp at pH7 6	18	18	16.56	27.17
coral polyp · control treatment	16	16	27.07	41.01
coral polyp · oil and dispersant treatment	16	16	32.14	53.90
coral polyp · oil treatment	16	16	23.58	42.80
coral polyp · dispersant treatment	16	16	31.83	49.57
Polyp	10	10	13.46	30.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.23
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.60
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.96
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.98
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.78
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.53
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.36
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.28
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.99
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.82
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.17
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.05
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.72
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.81
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.52
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.17
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.67
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.69
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.90
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.94
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.55
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.60
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.22
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.84
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.44
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.05
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.04
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.68
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.64
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.50
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.61
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.03
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.57
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.09
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.03
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.05
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.52
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.89
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.92
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.24
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.14
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.73
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.32
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.08
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.53
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.01
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.28
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.46
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.63
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.50
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.73
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.10
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.44
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.30
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.99
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.80
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.21
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.07
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.96
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.64
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.62
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.62
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.69
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.30
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.01
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.57
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.10
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.68
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.69
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.04
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.80
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.79
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.33
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.81
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.54
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.42
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.83
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.71
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	30.26
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.12
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.20
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	15.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.73
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.86
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.84
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.21

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.