Gene detail

Detailed information of OS493_004060-T1 in Lophelia pertusa

Genomic Location: scaffold_8:1882591...1887507
NR annotation: KAJ7387096.1, hypothetical protein OS493_004060 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R197	S-acyl fatty acid synthase thioesterase, medium chain OS=Mus musculus OX=10090 GN=Olah PE=2 SV=1
Q9NV23	S-acyl fatty acid synthase thioesterase, medium chain OS=Homo sapiens OX=9606 GN=OLAH PE=1 SV=1
Q70LM8	Linear gramicidin dehydrogenase LgrE OS=Brevibacillus parabrevis OX=54914 GN=lgrE PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010694 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00975 all species →	Thioesterase	Thioesterase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR012223 all species →	Family	Thioesterase type II, NRPS/PKS/S-FAS	Interproscan
IPR001031 all species →	Domain	Thioesterase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11487 all species →	THIOESTERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008610 all species →	Biological Process	lipid biosynthetic process	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004060-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004060-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

95TPM > 0

7Conditions

5.3Max TPM

1.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	1.61	4.16
polyp at pH7 6	18	16	2.42	5.33
coral polyp · control treatment	16	15	1.42	3.05
coral polyp · oil and dispersant treatment	16	14	0.80	2.60
coral polyp · oil treatment	16	15	1.91	4.51
coral polyp · dispersant treatment	16	14	0.91	2.14
Polyp	10	8	0.85	2.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.16
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.69
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.65
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.30
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.14
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.29
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.42
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.82
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.76
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.69
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.33
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.16
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.25
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.73
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.63
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.91
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.70
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.11
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.88
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.90
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.74
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.41
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.24
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.81
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.78
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.53
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.06
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.90
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.67
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.33
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.19
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.80
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.40
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.91
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.89
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.88
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.84
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.77
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.36
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.27
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.19
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.51
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.46
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.25
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.99
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.71
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.85
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.62
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.62
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.23
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.17
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.02
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.95
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.83
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.66
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.88
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.96
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.91
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.90
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.33
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.22
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.73
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.04
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.97
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.69
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.50
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.48
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.