Gene detail

Detailed information of OS493_004065-T1 in Lophelia pertusa

Genomic Location: scaffold_8:1921894...1936595
NR annotation: KAJ7387101.1, MFS/sugar transport protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZKJ5	Transmembrane protein 180 OS=Gallus gallus OX=9031 GN=MFSD13A PE=2 SV=1
Q14CX5	Transmembrane protein 180 OS=Homo sapiens OX=9606 GN=MFSD13A PE=1 SV=1
Q58CT4	Transmembrane protein 180 OS=Bos taurus OX=9913 GN=MFSD13A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001617 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13347 all species →	MFS_2	MFS/sugar transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040035 all species →	Family	Transmembrane protein 180	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28658 all species →	TRANSMEMBRANE PROTEIN 180	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_004065-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004065-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004065-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

21.9Max TPM

8.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.54	13.25
polyp at pH7 6	18	16	10.06	21.93
coral polyp · control treatment	16	16	9.67	19.34
coral polyp · oil and dispersant treatment	16	16	6.64	12.38
coral polyp · oil treatment	16	16	9.87	17.79
coral polyp · dispersant treatment	16	16	7.17	15.71
Polyp	10	10	8.91	13.87

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.25
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.58
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.56
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.37
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.90
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.43
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.29
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.99
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.77
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.19
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.04
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.46
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.08
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.65
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.69
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.93
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.58
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.21
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.62
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.43
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.76
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.36
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.65
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.90
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.63
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.26
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.34
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.46
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.43
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.35
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.10
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.13
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.97
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.86
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.69
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.38
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.71
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.38
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.38
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.78
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.63
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.49
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.34
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.16
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.25
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.72
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.87
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.79
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.39
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.55
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.53
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.43
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.94
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.56
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.79
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.45
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.58
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.41
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.15
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.71
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.89
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.54
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.49
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.04
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.30
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.43
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.22
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.25
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.87
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.70
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.50
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.80
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.46
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.30
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.94

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.