Gene detail

Detailed information of OS493_004076-T1 in Lophelia pertusa

Genomic Location: scaffold_8:2086503...2088266
NR annotation: KAJ7387111.1, hypothetical protein OS493_004076 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00330	Pyruvate dehydrogenase protein X component, mitochondrial OS=Homo sapiens OX=9606 GN=PDHX PE=1 SV=3
Q8BKZ9	Pyruvate dehydrogenase protein X component, mitochondrial OS=Mus musculus OX=10090 GN=Pdhx PE=1 SV=1
P22439	Pyruvate dehydrogenase protein X component OS=Bos taurus OX=9913 GN=PDHX PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001913 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00364 all species →	Biotin_lipoyl	Biotin-requiring enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003016 all species →	Binding_site	2-oxo acid dehydrogenase, lipoyl-binding site	Interproscan
IPR011053 all species →	Homologous_superfamily	Single hybrid motif	Interproscan
IPR000089 all species →	Domain	Biotin/lipoyl attachment	Interproscan
IPR045257 all species →	Family	Dihydrolipoamide acetyltransferase/Pyruvate dehydrogenase protein X component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23151 all species →	DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006086 all species →	Biological Process	acetyl-CoA biosynthetic process from pyruvate	Interproscan
GO:0045254 all species →	Cellular Component	pyruvate dehydrogenase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004076-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004076-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

14.5Max TPM

5.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	5.81	10.09
polyp at pH7 6	18	15	5.93	14.51
coral polyp · control treatment	16	16	6.54	13.02
coral polyp · oil and dispersant treatment	16	15	3.43	8.57
coral polyp · oil treatment	16	16	7.17	11.81
coral polyp · dispersant treatment	16	16	4.94	9.17
Polyp	10	10	3.03	5.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.09
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.99
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.37
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.05
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.89
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.39
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.01
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.55
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.42
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.14
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.28
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.36
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.43
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.13
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.56
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.28
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.81
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.98
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.68
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.94
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.83
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.10
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.20
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.19
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.10
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.82
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.22
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.01
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.30
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.58
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.57
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.30
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.01
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.95
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.81
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.75
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.28
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.23
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.92
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.58
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.27
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.81
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.61
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.04
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.55
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.56
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.29
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.95
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.90
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.66
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.07
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.11
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.92
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.17
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.64
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.26
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.48
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.87
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.11
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.02
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.34
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.40
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.23
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.46
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.28
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.20
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.17

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.