Gene detail

Detailed information of OS493_004092-T1 in Lophelia pertusa

Genomic Location: scaffold_8:2214247...2224547
NR annotation: KAJ7387127.1, Polymerase delta-interacting protein 2 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2S7	Polymerase delta-interacting protein 2 OS=Homo sapiens OX=9606 GN=POLDIP2 PE=1 SV=1
Q91VA6	Polymerase delta-interacting protein 2 OS=Mus musculus OX=10090 GN=Poldip2 PE=1 SV=1
Q89VE6	Protein ApaG OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=apaG PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005031 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04379 all species →	DUF525	ApaG domain	Family	Interproscan
PF08755 all species →	YccV-like	Hemimethylated DNA-binding protein YccV like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036623 all species →	Homologous_superfamily	Hemimethylated DNA-binding domain superfamily	Interproscan
IPR036767 all species →	Homologous_superfamily	ApaG domain superfamily	Interproscan
IPR007474 all species →	Domain	ApaG domain	Interproscan
IPR011722 all species →	Domain	Hemimethylated DNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14289 all species →	F-BOX ONLY PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042645 all species →	Cellular Component	mitochondrial nucleoid	Interproscan
GO:0070987 all species →	Biological Process	error-free translesion synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17809	POLDIP2; polymerase delta-interacting protein 2	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_004092-T1 global co-expression network