Gene detail

Detailed information of OS493_004106-T1 in Lophelia pertusa

Genomic Location: scaffold_8:2419738...2434888
NR annotation: KAJ7387140.1, hypothetical protein OS493_004106 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99042	D-amino-acid oxidase OS=Trigonopsis variabilis OX=34364 GN=DAO1 PE=1 SV=1
Q9X7P6	D-amino-acid oxidase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=dao PE=1 SV=1
Q1AYM8	D-amino-acid oxidase OS=Rubrobacter xylanophilus (strain DSM 9941 / JCM 11954 / NBRC 16129 / PRD-1) OX=266117 GN=dao PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001334 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01266 all species →	DAO	FAD dependent oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023209 all species →	Family	D-amino-acid oxidase	Interproscan
IPR006076 all species →	Domain	FAD dependent oxidoreductase	Interproscan
IPR006181 all species →	Conserved_site	D-amino acid oxidase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11530 all species →	D-AMINO ACID OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003884 all species →	Molecular Function	D-amino-acid oxidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019478 all species →	Biological Process	D-amino acid catabolic process	Interproscan
GO:0046416 all species →	Biological Process	D-amino acid metabolic process	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004106-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004106-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

83TPM > 0

7Conditions

1,187.3Max TPM

84.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	3	0.07	0.53
polyp at pH7 6	18	7	0.29	1.73
coral polyp · control treatment	16	16	17.60	204.19
coral polyp · oil and dispersant treatment	16	15	91.39	685.80
coral polyp · oil treatment	16	16	7.61	33.75
coral polyp · dispersant treatment	16	16	464.43	1,187.29
Polyp	10	10	2.03	6.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.41
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.33
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.73
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.38
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.72
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.67
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.28
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.27
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	204.19
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.35
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.07
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.75
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.94
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.34
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.22
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.19
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.01
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.59
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.39
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	685.80
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	157.68
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	149.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.74
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.22
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.01
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.73
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.65
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.10
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.04
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.79
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.75
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.16
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.50
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.78
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.32
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.21
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.20
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.88
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.81
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.70
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,187.29
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,165.98
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	955.11
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	807.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	503.99
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	447.68
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	433.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	431.84
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	423.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	319.32
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	312.73
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	179.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	117.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.60
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.54
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.12
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.68
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.09
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.42
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.08
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.94
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.82
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.66
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.17
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.17

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.