Gene detail

Detailed information of OS493_004119-T1 in Lophelia pertusa

Genomic Location: scaffold_8:2533629...2536152
NR annotation: KAJ7387153.1, Coiled-coil domain-containing protein 92 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008490 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14916 all species →	CCDC92	Coiled-coil domain of unknown function	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040370 all species →	Family	Coiled-coil domain-containing protein 74A/74B/92	Interproscan
IPR039496 all species →	Domain	CCDC92/74, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14882 all species →	COILED-COIL DOMAIN-CONTAINING 74A	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_004119-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004119-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004119-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

113.8Max TPM

44.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	30.47	41.03
polyp at pH7 6	18	18	29.92	56.66
coral polyp · control treatment	16	16	42.60	79.75
coral polyp · oil and dispersant treatment	16	16	51.17	66.99
coral polyp · oil treatment	16	16	40.10	48.14
coral polyp · dispersant treatment	16	16	82.26	113.80
Polyp	10	10	37.77	44.66

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.03
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.53
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.84
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.84
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.57
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.18
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.74
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.86
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.45
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.07
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.19
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.61
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.49
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.47
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.83
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.51
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.75
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.06
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.41
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.47
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.99
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.65
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.09
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.08
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.75
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.88
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.55
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.87
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.45
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.80
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.94
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.30
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.98
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.24
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.65
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.43
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.34
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.86
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.52
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.99
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.43
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.45
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.85
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.89
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.63
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.41
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.77
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.43
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.30
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.23
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.02
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.74
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.14
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.95
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.48
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.01
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.90
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.77
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.06
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.43
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.22
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.41
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.37
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.90
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.88
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	113.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.28
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.65
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	97.02
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.41
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.96
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.57
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.58
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.52
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.30
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.18
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.40
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.62
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	44.66
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	43.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	40.20
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	39.73
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	38.19
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	37.66
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	36.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	35.11
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	32.23
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	30.17

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.