Gene detail

Detailed information of OS493_004126-T1 in Lophelia pertusa

Genomic Location: scaffold_8:2594859...2595428
NR annotation: KAJ7387160.1, Transmembrane protein 45B [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q497B2	Transmembrane protein 45B OS=Rattus norvegicus OX=10116 GN=Tmem45b PE=1 SV=1
Q6NS09	Transmembrane protein 45B OS=Xenopus laevis OX=8355 GN=tmem45b PE=2 SV=1
Q5XGD7	Transmembrane protein 45B OS=Xenopus tropicalis OX=8364 GN=tmem45b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002374 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_004126-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR042127 all species →	Family	Transmembrane protein 45	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16007 all species →	EPIDIDYMAL MEMBRANE PROTEIN E9-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_004126-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004126-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004126-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

23.3Max TPM

5.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.61	6.63
polyp at pH7 6	18	18	3.62	6.65
coral polyp · control treatment	16	14	6.15	21.85
coral polyp · oil and dispersant treatment	16	13	6.06	21.50
coral polyp · oil treatment	16	15	6.96	23.26
coral polyp · dispersant treatment	16	15	7.59	22.72
Polyp	10	9	4.28	10.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.63
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.56
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.17
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.02
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.99
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.39
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.24
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.44
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.43
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.19
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.12
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.08
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.65
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.58
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.26
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.95
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.65
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.63
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.13
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.12
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.84
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.49
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.48
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.93
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.78
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.59
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.98
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.89
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.13
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.86
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.77
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.51
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.18
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.50
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.24
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.30
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.63
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.71
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.77
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.74
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.49
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.95
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.95
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.70
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.28
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.17
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.49
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.97
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.60
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.19
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.72
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.97
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.78
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.99
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.14
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.29
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.37
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.31
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.17
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.16
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.78
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.39
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.64
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.10
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.89
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.52
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.