Gene detail

Detailed information of OS493_004139-T1 in Lophelia pertusa

Genomic Location: scaffold_8:2714536...2724065
NR annotation: KAJ7387173.1, coiled-coil domain containing protein 64 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001390 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_004139-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR051149 all species →	Family	Spindly/BICDR Dynein Motor Adapter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32123 all species →	BICD FAMILY-LIKE CARGO ADAPTER	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_004139-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004139-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004139-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

218.1Max TPM

49.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.37	45.01
polyp at pH7 6	18	18	23.98	37.18
coral polyp · control treatment	16	16	43.89	80.31
coral polyp · oil and dispersant treatment	16	16	61.88	124.31
coral polyp · oil treatment	16	16	32.28	47.64
coral polyp · dispersant treatment	16	16	130.41	218.15
Polyp	10	10	20.84	36.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.01
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.17
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.45
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.42
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.89
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.95
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.52
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.36
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.19
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.06
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.55
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.62
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.70
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.16
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.18
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.19
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.96
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.40
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.95
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.18
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.37
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.78
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.78
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.62
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.19
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.75
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.42
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.04
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.89
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.59
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.16
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.07
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.68
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.25
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.53
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.69
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.80
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.37
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.69
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.93
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	124.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.60
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.69
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.37
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.03
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.07
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.03
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.94
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.56
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.64
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.76
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.29
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.75
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.82
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.20
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.54
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.82
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.23
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.98
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.78
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.50
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	218.15
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	196.90
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	184.97
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	177.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	174.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	165.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	156.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	142.03
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	124.26
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	124.11
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	104.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	89.38
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.81
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.84
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	36.70
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	35.28
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	28.54
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	20.28
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	18.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	15.60
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.75
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.66
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.36
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	11.19

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.