Gene detail

Detailed information of OS493_004143-T1 in Lophelia pertusa

Genomic Location: scaffold_8:2746459...2754573
NR annotation: KAJ7387177.1, hypothetical protein OS493_004143 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q803E1	Nuclear cap-binding protein subunit 3 OS=Danio rerio OX=7955 GN=ncbp3 PE=2 SV=1
Q6DE94	Nuclear cap-binding protein subunit 3 OS=Xenopus laevis OX=8355 GN=ncbp3 PE=2 SV=1
Q6DFQ2	Nuclear cap-binding protein subunit 3 OS=Xenopus tropicalis OX=8364 GN=ncbp3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006250 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10309 all species →	NCBP3	Nuclear cap-binding protein subunit 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019416 all species →	Family	Nuclear cap-binding protein subunit 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16291 all species →	NUCLEAR CAP-BINDING PROTEIN SUBUNIT 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000340 all species →	Molecular Function	RNA 7-methylguanosine cap binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0000339 all species →	Molecular Function	RNA cap binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004143-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_004143-T1 global co-expression network