Gene detail

Detailed information of OS493_004152-T1 in Lophelia pertusa

Genomic Location: scaffold_8:2819408...2821938
NR annotation: KAJ7387185.1, Mitochondrial import inner membrane translocase subunit Tim22 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CQ85	Mitochondrial import inner membrane translocase subunit Tim22 OS=Mus musculus OX=10090 GN=Timm22 PE=1 SV=1
Q9JKW1	Mitochondrial import inner membrane translocase subunit Tim22 OS=Rattus norvegicus OX=10116 GN=Timm22 PE=2 SV=2
Q5U4U5	Mitochondrial import inner membrane translocase subunit Tim22 OS=Xenopus laevis OX=8355 GN=timm22 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007705 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02466 all species →	Tim17	Tim17/Tim22/Tim23/Pmp24 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039175 all species →	Family	Mitochondrial import inner membrane translocase subunit TIM22	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14110 all species →	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008320 all species →	Molecular Function	protein transmembrane transporter activity	Interproscan
GO:0030943 all species →	Molecular Function	mitochondrion targeting sequence binding	Interproscan
GO:0042721 all species →	Cellular Component	TIM22 mitochondrial import inner membrane insertion complex	Interproscan
GO:0045039 all species →	Biological Process	protein insertion into mitochondrial inner membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17790	TIM22; mitochondrial import inner membrane translocase subunit TIM22	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004152-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

38.9Max TPM

13.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.03	19.15
polyp at pH7 6	18	18	18.31	29.28
coral polyp · control treatment	16	16	15.07	38.91
coral polyp · oil and dispersant treatment	16	16	10.90	27.75
coral polyp · oil treatment	16	16	12.58	19.93
coral polyp · dispersant treatment	16	16	6.17	17.19
Polyp	10	9	11.47	22.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.15
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.48
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.60
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.53
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.85
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.52
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.48
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.41
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.23
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.83
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.16
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.63
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.34
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.59
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.28
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.45
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.79
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.42
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.76
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.44
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.13
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.01
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.22
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.53
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.32
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.91
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.39
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.54
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.74
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.52
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.38
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.26
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.92
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.70
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.68
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.85
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.84
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.75
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.94
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.47
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.73
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.09
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.85
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.83
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.52
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.20
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.04
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.22
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.93
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.97
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.37
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.49
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.54
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.79
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.94
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.05
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.91
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.40
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.19
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.42
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.13
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.83
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.74
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.48
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.29
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.79
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.74
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.60
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.46
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.07
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.50
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.76
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.37
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.63
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.20
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.18
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.69
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.71
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.09
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.