Gene detail

Detailed information of OS493_004158-T1 in Lophelia pertusa

Genomic Location: scaffold_8:2905899...2907602
NR annotation: KAJ7387190.1, dCTP pyrophosphatase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QY93	dCTP pyrophosphatase 1 OS=Mus musculus OX=10090 GN=Dctpp1 PE=1 SV=1
Q9H773	dCTP pyrophosphatase 1 OS=Homo sapiens OX=9606 GN=DCTPP1 PE=1 SV=1
Q91VC0	dCTP pyrophosphatase 1 OS=Rattus norvegicus OX=10116 GN=Dctpp1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007992 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12643 all species →	MazG-like	MazG-like family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025984 all species →	Family	dCTP pyrophosphatase 1	Interproscan
IPR052555 all species →	Family	dCTP Pyrophosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46523 all species →	DCTP PYROPHOSPHATASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009143 all species →	Biological Process	nucleoside triphosphate catabolic process	Interproscan
GO:0047429 all species →	Molecular Function	nucleoside triphosphate diphosphatase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006253 all species →	Biological Process	dCTP catabolic process	Interproscan
GO:0042262 all species →	Biological Process	DNA protection	Interproscan
GO:0047840 all species →	Molecular Function	dCTP diphosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16904	DCTPP1; dCTP diphosphatase	EC:3.6.1.12	Pyrimidine metabolism	ko00240	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004158-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

25.7Max TPM

3.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.98	7.04
polyp at pH7 6	18	14	3.61	11.10
coral polyp · control treatment	16	16	3.72	16.93
coral polyp · oil and dispersant treatment	16	15	3.00	25.74
coral polyp · oil treatment	16	16	4.26	11.50
coral polyp · dispersant treatment	16	14	2.04	6.49
Polyp	10	8	4.16	9.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.47
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.35
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.88
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.63
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.37
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.32
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.27
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.06
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.53
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.36
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.80
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.10
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.99
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.67
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.22
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.11
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.09
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.68
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.36
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.32
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.93
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.13
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.89
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.56
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.35
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.12
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.88
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.83
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.41
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.24
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.69
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.54
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.41
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.11
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.48
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.10
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.81
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.68
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.30
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.28
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.50
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.62
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.23
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.89
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.02
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.66
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.26
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.99
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.94
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.67
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.19
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.86
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.52
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.42
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.49
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.07
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.13
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.54
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.50
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.64
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.47
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.67
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.47
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.26
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.34
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.11
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.