Gene detail

Detailed information of OS493_004160-T1 in Lophelia pertusa

Genomic Location: scaffold_8:2911077...2914841
NR annotation: KAJ7387191.1, Structure-specific endonuclease subunit SLX1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0IH86	Structure-specific endonuclease subunit slx1 OS=Xenopus laevis OX=8355 GN=slx1a PE=2 SV=1
A7STV9	Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis OX=45351 GN=v1g174298 PE=3 SV=1
Q5PQP5	Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus OX=10116 GN=Slx1b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007305 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21202 all species →	SLX1_C	Structure-specific endonuclease subunit SLX1, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035901 all species →	Homologous_superfamily	GIY-YIG endonuclease superfamily	Interproscan
IPR050381 all species →	Family	SLX1 structure-specific endonuclease	Interproscan
IPR048749 all species →	Domain	Structure-specific endonuclease subunit SLX1, C-terminal domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20208 all species →	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0008821 all species →	Molecular Function	crossover junction DNA endonuclease activity	Interproscan
GO:0017108 all species →	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0033557 all species →	Cellular Component	Slx1-Slx4 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15078	SLX1; structure-specific endonuclease subunit SLX1	EC:3.6.1.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_004160-T1 global co-expression network