Gene detail

Detailed information of OS493_004162-T1 in Lophelia pertusa

Genomic Location: scaffold_8:2920014...2923872
NR annotation: KAJ7387193.1, Transmembrane protein 17 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E1BY51	Transmembrane protein 17 OS=Gallus gallus OX=9031 GN=TMEM17 PE=3 SV=1
A4FUY9	Transmembrane protein 17 OS=Bos taurus OX=9913 GN=TMEM17 PE=2 SV=1
Q8K0U3	Transmembrane protein 17 OS=Mus musculus OX=10090 GN=Tmem17 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007537 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09799 all species →	Transmemb_17	Predicted membrane protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019184 all species →	Family	Uncharacterised protein family, transmembrane-17	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13531 all species →	GEO07735P1-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035869 all species →	Cellular Component	ciliary transition zone	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19384	TMEM17; transmembrane protein 17	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004162-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

28.7Max TPM

4.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.00	7.33
polyp at pH7 6	18	16	4.07	7.41
coral polyp · control treatment	16	16	5.37	28.66
coral polyp · oil and dispersant treatment	16	16	3.74	19.79
coral polyp · oil treatment	16	16	4.76	7.14
coral polyp · dispersant treatment	16	15	2.30	6.04
Polyp	10	9	3.53	7.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.86
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.18
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.47
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.35
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.21
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.14
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.07
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.31
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.02
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.84
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.47
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.99
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.41
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.94
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.68
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.66
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.89
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.35
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.40
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.15
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.03
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.69
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.68
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.58
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.12
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.43
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.17
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.65
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.54
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.52
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.12
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.46
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.21
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.60
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.79
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.79
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.14
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.75
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.77
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.74
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.64
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.38
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.28
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.69
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.14
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.02
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.77
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.55
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.49
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.66
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.16
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.74
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.09
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.04
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.86
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.74
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.39
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.36
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.33
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.26
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.17
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.61
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.58
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.48
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.41
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.22
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.64
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.