Gene detail

Detailed information of OS493_004164-T1 in Lophelia pertusa

Genomic Location: scaffold_8:2927332...2930825
NR annotation: KAJ7387195.1, Tektin 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q969V4	Tektin-1 OS=Homo sapiens OX=9606 GN=TEKT1 PE=1 SV=1
Q9TTW3	Tektin-1 OS=Canis lupus familiaris OX=9615 GN=TEKT1 PE=2 SV=1
Q9DAJ2	Tektin-1 OS=Mus musculus OX=10090 GN=Tekt1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001532 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03148 all species →	Tektin	Tektin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048256 all species →	Family	Tektin-like	Interproscan
IPR000435 all species →	Family	Tektins	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19960 all species →	TEKTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0060294 all species →	Biological Process	cilium movement involved in cell motility	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18628	TEKT1; tektin-1	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004164-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

173.6Max TPM

41.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	24.74	40.87
polyp at pH7 6	18	18	21.84	49.25
coral polyp · control treatment	16	16	53.55	173.58
coral polyp · oil and dispersant treatment	16	16	48.53	73.83
coral polyp · oil treatment	16	16	38.65	59.90
coral polyp · dispersant treatment	16	16	67.66	128.45
Polyp	10	10	35.25	56.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.87
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.01
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.45
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.82
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.17
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.84
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.55
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.49
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.76
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.77
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.45
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.09
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.76
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.85
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.58
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.25
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.51
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.22
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.69
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.55
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.80
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.83
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.55
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.01
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.18
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.49
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	173.58
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	100.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.97
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.89
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.39
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.63
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.76
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.97
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.90
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.46
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.09
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.09
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.15
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.30
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.26
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.83
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.14
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.02
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.72
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.99
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.07
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.57
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.70
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.21
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.25
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.14
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.57
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.99
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.47
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.40
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.75
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.79
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.91
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.57
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.13
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.87
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.78
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.90
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.53
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	128.45
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.12
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	89.65
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.85
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.62
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.86
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.16
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.90
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.61
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.35
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.71
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.81
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	56.22
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	44.80
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	40.04
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	37.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	37.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	33.49
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	30.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	26.95
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.44
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	22.17

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.